scif

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Tutorial with snakemake and Scientific Filesystem

snakemake scif scientific-filesystem

golang implementation of the Scientific Filesystem

golang scif scientific-filesystem

an example scientific filesystem to provide custom metrics and helpers for a container

time singularity strace scif scientific-filesystem lolcow

a template scientific filesystem with RNA seq tools, as an example for development

example encode scif scientific-filesystem rnatoy

testing development of an app catalog with elm (under development)

learning elm app-catalog scif

a template ready to go to easily build, test, and deploy reproducible SCIF containers!

docker builder reproducibility scif scientific-filesystem

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

docker nextflow singularity scif

example scientific filesystem to assess metrics across different solutions to a single problem, printing "Hello World"

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