progressive-alignment

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aylaib / MSA-Bioinformatics-Project

Implementation and comparison of multiple sequence alignment algorithms (Progressive vs. Genetic Algorithm SAGA) in Python

python genetic-algorithm needleman-wunsch performance-analysis sequence-alignment msa multiple-sequence-alignment algorithme-genetique progressive-alignment saga-algorithm alignement-de-sequences

Updated Jul 9, 2025
Python

matinapap / Bioinformatics

Star

University Assignment for the subject of Bioinformatics. Dependency-free Python pipeline for DNA sequence analysis: Needleman–Wunsch alignment, UPGMA guide tree, progressive multiple alignment and profile HMM estimation. Reproducible CLI with tests and CI.

python cli bioinformatics algorithms university-project computational-biology needleman-wunsch dna phylogenetics hidden-markov-model newick upgma sequence-alignment multiple-sequence-alignment profile-hmm progressive-alignment

Updated Oct 5, 2026
Python

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