TaxOnTree is a bioinformatic tool that automatically colors a phylogenetic tree according to the taxonomic information provided by NCBI taxonomy.
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Aug 24, 2022 - Perl
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figtree
Here are 8 public repositories matching this topic...
Programmatic styling of phylogenetic trees for FigTree visualization
python bioinformatics taxonomy reproducible-research nexus scientific-visualization phylogenetics newick phylogeny figtree tree-visualization phyloinformatics
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Oct 1, 2026 - Python
FigTreeKit Studio 是 figtreekit 的可视化前端。 它提供图形界面调参、实时 PNG 预览、等效 CLI 命令与 JSON 配置导出， 让非编程的生物学家、审稿人也能快速样式化系统发育树，同时保持完全可复现性。
visualization python macos gui bioinformatics reproducible-research phylogenetics systematics phylogenetic-tree scientific-software figtree molecular-phylogenetics
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Oct 1, 2026 - Python
Integrate FigTree Evaluator with JSON Forms
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Nov 24, 2024 - TypeScript
This project performs an automated phylogenetic analysis of nucleotide sequences retrieved from NCBI. The pipeline includes sequence alignment, concatenation, phylogenetic inference (maximum likelihood, maximum parsimony, and Bayesian), and formatting for visualization.
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May 2, 2025 - Python
Investigating HIV subtype evolution through maximum-likelihood and GTR model analysis, focusing on clade formation and genetic diversity. Utilizing BEAST for HIV-1 sequence analysis to estimate evolutionary rates and MRCA, highlighting subtype diversification.
bootstrap bioinformatics phylogenetic-trees beast tracer tempest phyml taxa beauti figtree seaview treeannotator maximum-clade-credibility
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Feb 9, 2024 - R
Rewrite of bootstrap-styled/v4 to support bootstrap v5
react bootstrap typescript styled-components react-components css-in-js theming component-library ui-components design-tokens dark-mode css-variables design-system theme-provider figtree bootstrap-5 bootstrap-styled metatoy
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Aug 25, 2026 - TypeScript
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