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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 212 24

  2. paintera paintera Public

    Kotlin 120 19

  3. render render Public

    Render transformed image tiles

    Java 37 35

  4. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 37 14

  5. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 11

  6. n5-zarr n5-zarr Public

    Zarr filesystem backend for N5

    Java 24 19

Repositories

Showing 10 of 118 repositories
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe's past year of commit activity
    Java 2 BSD-2-Clause 7 8 4 Updated Oct 13, 2026
  • render Public

    Render transformed image tiles

    saalfeldlab/render's past year of commit activity
    Java 37 GPL-2.0 35 29 2 Updated Oct 12, 2026
  • csub Public

    submits jobs to an LSF cluster from inside a sandbox, and runs those jobs in a sandbox too

    saalfeldlab/csub's past year of commit activity
    Python 1 2 0 3 Updated Oct 12, 2026
  • paintera-conversion-helper Public

    Script to assist conversion of n5 datasets to paintera-friendly formats

    saalfeldlab/paintera-conversion-helper's past year of commit activity
    Kotlin 1 4 10 3 Updated Oct 8, 2026
  • paintera Public
    saalfeldlab/paintera's past year of commit activity
    Kotlin 120 GPL-2.0 19 77 (11 issues need help) 3 Updated Oct 7, 2026
  • n5-hdf5 Public

    Best effort N5 implementation on HDF5 files (despite the irony).

    saalfeldlab/n5-hdf5's past year of commit activity
    Java 6 BSD-2-Clause 11 5 2 Updated Oct 6, 2026
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3's past year of commit activity
    Java 5 BSD-2-Clause 7 2 1 Updated Oct 5, 2026
  • flyvis-gnn Public

    GNN for fly visual system connectivity recovery with LLM-guided exploration

    saalfeldlab/flyvis-gnn's past year of commit activity
    Python 0 1 0 0 Updated Sep 26, 2026
  • bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    saalfeldlab/bigwarp's past year of commit activity
    Java 37 GPL-2.0 14 43 2 Updated Sep 23, 2026
  • sam-link Public

    Bridge between JVM applications and Segment Anything providers

    saalfeldlab/sam-link's past year of commit activity
    Kotlin 1 BSD-2-Clause 0 0 0 Updated Sep 23, 2026
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