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obophenotype

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  1. human-phenotype-ontology human-phenotype-ontology Public

    Ontology for the description of human clinical features

    Makefile 374 72

  2. cell-ontology cell-ontology Public

    An ontology of cell types

    Makefile 212 59

  3. uberon uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    Emacs Lisp 163 43

  4. upheno upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    Jupyter Notebook 87 21

  5. bio-attribute-ontology bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    Jupyter Notebook 31 13

  6. ncbitaxon ncbitaxon Public

    Build for NCBITaxon

    Python 31 7

Repositories

Showing 10 of 65 repositories
  • zebrafish-phenotype-ontology Public

    A vocabulary for describing Zebrafish Phenotypes

    obophenotype/zebrafish-phenotype-ontology's past year of commit activity
    Makefile 9 6 22 3 Updated Sep 26, 2026
  • chebi_obo_slim Public

    A slimmed down version of CHEBI sufficient to cover 99% of the term needs across OBO ontologies

    obophenotype/chebi_obo_slim's past year of commit activity
    Makefile 4 4 5 2 Updated Sep 25, 2026
  • hpo-translations Public

    This repo will contain the Human Phenotype Ontology language profiles

    obophenotype/hpo-translations's past year of commit activity
    Makefile 9 6 16 3 Updated Sep 25, 2026
  • bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    obophenotype/bio-attribute-ontology's past year of commit activity
    Jupyter Notebook 31 CC0-1.0 13 95 11 Updated Sep 24, 2026
  • uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    obophenotype/uberon's past year of commit activity
    Emacs Lisp 163 43 261 40 Updated Sep 21, 2026
  • cell-ontology Public

    An ontology of cell types

    obophenotype/cell-ontology's past year of commit activity
    Makefile 212 CC-BY-4.0 59 330 39 Updated Sep 18, 2026
  • upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    obophenotype/upheno's past year of commit activity
    Jupyter Notebook 87 CC0-1.0 21 282 (5 issues need help) 27 Updated Sep 16, 2026
  • pro_obo_slim Public

    A repo to generate a pro slim for the OBO phenotype organisation

    obophenotype/pro_obo_slim's past year of commit activity
    Makefile 1 1 0 0 Updated Sep 15, 2026
  • planaria-ontology Public

    PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.

    obophenotype/planaria-ontology's past year of commit activity
    Makefile 6 7 10 0 Updated Sep 8, 2026
  • developmental-mouse-anatomy-ontology Public

    Ontologies for mouse anatomy and development

    obophenotype/developmental-mouse-anatomy-ontology's past year of commit activity
    Makefile 5 3 57 0 Updated Sep 4, 2026