Issues

• Installing DeepBGC for pipeline integration

  Merck/deepbgc#104 · Filter by author Tim-Kirkwood opened on Oct 3, 2025

• why not plant?

  Merck/deepbgc#102 · Filter by author veritas515nature opened on Jun 28, 2025

• [Question] How can I use precomputed genes via GFF format with DeepBGC?

  Merck/deepbgc#101 · Filter by author jolespin opened on Oct 1, 2024

• DeepBGC failed with ValueError: Grouper for 'sequence_id' not 1-dimensional

  Merck/deepbgc#100 · Filter by author marlaux opened on Jul 29, 2024

• installing deepbgc

  Merck/deepbgc#99 · Filter by author kadesu opened on Jun 24, 2024
  1

• ValueError: End location (8780) must be greater than or equal to start location (9428)

  Merck/deepbgc#98 · Filter by author PKU007 opened on Mar 20, 2024

• deepbgc info crash - same as Issue #39

  Merck/deepbgc#97 · Filter by author jfoldi81 opened on Feb 20, 2024

• User Warning

  Merck/deepbgc#96 · Filter by author EmiCA22 opened on Feb 8, 2024

• Looking for individual genes

  Merck/deepbgc#94 · Filter by author XT920 opened on Nov 17, 2023

• running "deepbgc info" issue

  Merck/deepbgc#91 · Filter by author AledHe opened on Jun 9, 2023

• Bugs for protein input

  Merck/deepbgc#90 · Filter by author Xinpeng021001 opened on May 10, 2023
  1

• Hmmer and Prodigal Package Access Problem

  Merck/deepbgc#89 · Filter by author plouisross opened on Apr 24, 2023
  1

• Could deepBGC be used for special gene clusters?

  Merck/deepbgc#88 · Filter by author Xinpeng021001 opened on Apr 20, 2023

• what "inhibitor" means???

  Merck/deepbgc#87 · Filter by author esraagithub opened on Feb 21, 2023

• fit_generator

  Merck/deepbgc#86 · Filter by author wawpaopao opened on Feb 13, 2023

• how to create negative samples?

  Merck/deepbgc#85 · Filter by author wawpaopao opened on Dec 8, 2022
  1

• how to get a cluster?

  Merck/deepbgc#83 · Filter by author wawpaopao opened on Oct 18, 2022

• WARNING: Tensor flow backened message when running deepbgc info into the CLI

  Merck/deepbgc#82 · Filter by author zagonzalez opened on Oct 4, 2022
  1

• Visualization

  Merck/deepbgc#80 · Filter by author OwenNaicker opened on Sep 20, 2022
  1

• bug in get_proteins_by_id affecting pfam annotator

  Merck/deepbgc#78 · Filter by author LuisFF opened on Sep 6, 2022
  4

• Error during detector training

  Merck/deepbgc#73 · Filter by author esraagithub opened on May 15, 2022
  5

• How to get antismash and deebgc cobined svg?

  Merck/deepbgc#72 · Filter by author MenusGarg opened on May 12, 2022

• I am getting an issue regarding memory, how to solve this ?

  Merck/deepbgc#71 · Filter by author devarajarun opened on Mar 20, 2022

• DeepBGC failed with ValueError: missing molecule_type in annotations

  Merck/deepbgc#67 · Filter by author chengyou96 opened on Feb 11, 2022
  4

• deepbgc pipeline does not seem to use more than 2 cores?

  Merck/deepbgc#65 · Filter by author bkm23644 opened on Jan 19, 2022
  2