MDHHS-Bioinformatics

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1. corge corge Public

   Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations

   Nextflow 12 1

2. basset basset Public

   Nextflow pipeline for species-specific typing of bacteria

   Nextflow 11

3. poodle poodle Public

   Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…

   Nextflow 10

4. HCV_Hasher HCV_Hasher Public

   A bioinformatics python script to find potential linkages between HCV WGS data

   Python 1