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@HassounLab

Hassoun Lab: Computational Systems + Synthetic Biology

Developing ANALYSIS + DESIGN tools to advance (re-)designing biology

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  1. MADGEN MADGEN Public

    MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION

    Python 22 3

  2. GNN-SOM GNN-SOM Public

    Site-of-Metabolsim prediction using Graph Neural Networks.

    Jupyter Notebook 15 4

  3. JESTR1 JESTR1 Public

    Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data

    Python 15 3

  4. EPP EPP Public

    Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"

    Python 13 3

  5. ASAP-SML ASAP-SML Public

    ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning

    Jupyter Notebook 11 2

  6. BAM BAM Public

    Biotransformation-based annotation method

    Python 8

Repositories

Showing 10 of 23 repositories
  • TxCoPilot Public

    Agentic flow for causal network inference on transcriptomics

    HassounLab/TxCoPilot's past year of commit activity
    Python 0 MIT 0 0 0 Updated May 20, 2026
  • JESTR1 Public

    Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data

    HassounLab/JESTR1's past year of commit activity
    Python 15 MIT 3 3 0 Updated May 8, 2026
  • SpectraClassifiers Public

    Transformer-based spectra classifiers

    HassounLab/SpectraClassifiers's past year of commit activity
    Python 0 0 0 0 Updated May 7, 2026
  • BGCat Public

    Structural Classification of Biosynthetic Gene Cluster Products

    HassounLab/BGCat's past year of commit activity
    Python 3 MIT 1 1 0 Updated Dec 3, 2025
  • GIF Public

    GIF: Guiding LLMs through structured prompting and iterative refinement for molecular fragmentation

    HassounLab/GIF's past year of commit activity
    Python 1 0 0 0 Updated Dec 2, 2025
  • MVP Public

    Multi-View Projection for metabolite annotation

    HassounLab/MVP's past year of commit activity
    Python 1 0 0 0 Updated Oct 24, 2025
  • MADGEN Public

    MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION

    HassounLab/MADGEN's past year of commit activity
    Python 22 MIT 3 0 1 Updated Sep 23, 2025
  • OMG Public

    Optimized Molecular Generation (OMG) for de novo mass spectrum annotation

    Python 3 0 0 0 Updated Aug 7, 2025
  • MDM Public

    Microbial Drug Metabolism (MDM) prediction

    HassounLab/MDM's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 21, 2025
  • PubChem-LLM-Retrieval Public

    This Github repository holds the supporting documents for the paper "Evaluation of search-enabled Pre-trained Large Language Models on retrieval tasks for the PubChem Database"

    HassounLab/PubChem-LLM-Retrieval's past year of commit activity
    0 0 0 0 Updated Oct 21, 2024

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