Issues

• PyPI releases 0.4.1 and 0.4.2 affected by Shai-Hulud supply chain attack

  GangCaoLab/CoolBox#117 · Filter by author StefanoCretti opened on Jun 7, 2026
  3

• Maybe csi index is better?

  GangCaoLab/CoolBox#112 · Filter by author zoomlion opened on Oct 15, 2025
  1

• install error

  GangCaoLab/CoolBox#111 · Filter by author xiasijian opened on Apr 29, 2025
  1

• API: Browser.goto() sporadically throws errors even if given a valid range

  GangCaoLab/CoolBox#110 · Filter by author adadiehl opened on Apr 7, 2025

• TADCoverage bed error when index is older than data file

  wontfix
  GangCaoLab/CoolBox#108 · Filter by author rikrdo89 opened on Mar 2, 2025
  1

  

• Adding new tracks when running the web app from the CLI

  enhancement
  GangCaoLab/CoolBox#107 · Filter by author rikrdo89 opened on Feb 28, 2025
  1

  

• Issues using parameters in CLI

  GangCaoLab/CoolBox#102 · Filter by author jamesoccean1 opened on Sep 27, 2024
  3

• 您好，可以画整个基因组互作吗？

  GangCaoLab/CoolBox#99 · Filter by author Zheng19w opened on Apr 26, 2024

• Plot saving in API mode

  GangCaoLab/CoolBox#96 · Filter by author DexinYang1998 opened on Apr 3, 2024
  1

• Is there a way to go directly from a pd.Dataframe version of a Bed file?

  GangCaoLab/CoolBox#89 · Filter by author haleybianchi opened on Oct 26, 2023

• Strange behavior of bigwig visualization

  GangCaoLab/CoolBox#88 · Filter by author camelest opened on Oct 5, 2023
  1

• plot entire genome

  GangCaoLab/CoolBox#87 · Filter by author aminakur opened on Jul 20, 2023

• plot DNA feature error

  GangCaoLab/CoolBox#85 · Filter by author yangfeizZZ opened on Jul 1, 2023

• Requesting Assistance with CoolBox Visualization - Achieving A/B compartments

  GangCaoLab/CoolBox#84 · Filter by author wbszhu opened on Jun 30, 2023
  2

• joint view two different cool files

  GangCaoLab/CoolBox#79 · Filter by author EnrichettaMileti opened on Mar 2, 2023
  1

• Installation fail with pip python3.9

  GangCaoLab/CoolBox#77 · Filter by author xunchen85 opened on Nov 18, 2022
  4

• Increase fontsize of GTF

  GangCaoLab/CoolBox#76 · Filter by author gdolsten opened on Oct 31, 2022

• Change aspect ratio of jointview

  GangCaoLab/CoolBox#75 · Filter by author gdolsten opened on Oct 31, 2022

• Error when plotting SNP track with no SNPs in plot range

  GangCaoLab/CoolBox#74 · Filter by author alexjcornish opened on Oct 24, 2022

• Missing arcs when plotting BEDPE file format

  bug
  GangCaoLab/CoolBox#73 · Filter by author eafyounian opened on Jul 15, 2022
  1

  

• Apply CoolBox to the transcript coordinate system

  enhancement
  GangCaoLab/CoolBox#72 · Filter by author ifantasy opened on Apr 18, 2022

• A few bugs in loops (arcs) and Hi-C Heatmap body.

  bug
  GangCaoLab/CoolBox#70 · Filter by author Linhua-Sun opened on Mar 24, 2022
  1

• Is it possibile to add highlight regions on Hi-C heatmap body horizontally?

  enhancement
  GangCaoLab/CoolBox#69 · Filter by author Linhua-Sun opened on Mar 23, 2022
  3

• Docker installation correction

  GangCaoLab/CoolBox#68 · Filter by author skr3178 opened on Mar 20, 2022

• [feature request]collinear view

  enhancement
  GangCaoLab/CoolBox#67 · Filter by author jksr opened on Jan 30, 2022
  2