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@DIncalciLab

DIncalciLab

Bioinformatics software developed at the D'Incalci group, IRCCS Humanitas Research Hospital and Humanitas University.

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  1. samurai samurai Public

    A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

    Nextflow 20 2

Repositories

Showing 10 of 18 repositories
  • samurai Public

    A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

    DIncalciLab/samurai's past year of commit activity
    Nextflow 20 MIT 2 14 0 Updated Jul 15, 2026
  • nf-core-modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    DIncalciLab/nf-core-modules's past year of commit activity
    Nextflow 0 MIT 1,125 0 0 Updated Jun 29, 2026
  • nf-core-test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    DIncalciLab/nf-core-test-datasets's past year of commit activity
    0 MIT 537 0 0 Updated May 19, 2026
  • test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    DIncalciLab/test-datasets's past year of commit activity
    0 MIT 537 0 0 Updated Apr 29, 2026
  • samurai-test-data Public

    Public data files for SAMURAI tests

    DIncalciLab/samurai-test-data's past year of commit activity
    0 MIT 0 0 0 Updated Dec 12, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    DIncalciLab/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,174 0 0 Updated Dec 2, 2025
  • ichorCNA Public Forked from GavinHaLab/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    DIncalciLab/ichorCNA's past year of commit activity
    R 0 GPL-3.0 106 0 0 Updated Dec 2, 2025
  • mgikit-multiqc Public Forked from sagc-bioinformatics/mgikit-multiqc

    MultiQC plugin to parse and integrate reports generated by mgikit demultiplexer

    DIncalciLab/mgikit-multiqc's past year of commit activity
    Python 0 MIT 1 0 0 Updated Jun 11, 2025
  • PureCN Public Forked from lima1/PureCN

    Copy number calling and variant classification using targeted short read sequencing

    DIncalciLab/PureCN's past year of commit activity
    R 0 Artistic-2.0 33 0 0 Updated Apr 23, 2025
  • sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    DIncalciLab/sarek's past year of commit activity
    Nextflow 0 MIT 566 0 0 Updated Apr 10, 2025
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