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build(jupyter): bump the uv-deps group across 1 directory with 10 updates - #155

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Sep 30, 2026
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Bumps the uv-deps group with 10 updates in the /apps/cogstack-jupyter-hub directory:

Package From To
virtualenv 21.7.8 21.13.0
jupyterlab 4.6.3 4.6.4
isort 8.0.1 9.0.1
matplotlib 3.11.1 3.11.2
plotly 7.0.0 7.1.0
pymssql 2.4.1 2.4.2
psycopg[binary,c,pool] 3.3.5 3.3.6
neo4j 6.3.0 6.3.1
click 8.4.2 8.5.0
ruff 0.16.8 0.16.9

Updates virtualenv from 21.7.8 to 21.13.0

Release notes

Sourced from virtualenv's releases.

21.13.0

What's Changed

New Contributors

Full Changelog: pypa/virtualenv@21.12.1...21.13.0

21.12.1

What's Changed

Full Changelog: pypa/virtualenv@21.12.0...21.12.1

21.12.0

What's Changed

Full Changelog: pypa/virtualenv@21.11.1...21.12.0

21.11.1

What's Changed

... (truncated)

Changelog

Sourced from virtualenv's changelog.

Features - 21.13.0

  • Add Changelog and Funding links to the PyPI project metadata, and replace the 2020-202x placeholder in LICENSE with 2020-present so the copyright field of the wheel SBOM reads as a real range - by :user:gaborbernat. (:issue:3334)

Bugfixes - 21.13.0

  • Escape the curly single quotes U+2018-U+201B in the PowerShell activator's quote so a virtual environment prompt, name or Tcl/Tk library path containing them can no longer close the string literal and run commands - by :user:gaborbernat. (:issue:3325)
  • Stop the bash activator from re-expanding the prompt inside PS1, so a virtual environment name or --prompt value containing $(...), backticks or backslashes no longer runs as a command each time bash draws the prompt - by :user:gaborbernat. (:issue:3326)

Improved Documentation - 21.13.0

  • Correct the documented changelog fragment types and example to match the enforced towncrier categories. (:issue:3323)
  • List the Unlicense and the SPDX BSD variants in the runtime dependency licensing policy, matching the filelock releases virtualenv installs on Python 3.9, and describe the dependency review check that enforces the policy. (:issue:3329)
  • Show how to check a release with gh release verify and gh release verify-asset, and how to rebuild the zipapp byte for byte with the build tool versions its SBOMs list. Drop the claims that the zipapp build does not pin the distributions it bundles and that wheels differ between build machines - by :user:gaborbernat. (:issue:3330)

v21.12.1 (2026-09-24)


Bugfixes - 21.12.1

  • Limit the :PEP:832 .venv redirect to folders holding a pyproject.toml and no .venv yet, so virtualenv foo in a scratch folder, and tools such as tox or nox building environments through virtualenv, no longer claim a folder's default environment - by :user:gaborbernat.

    • --venv-redirect writes the redirect in any folder and replaces an earlier virtualenv redirect.
    • A flag on the command line overrides the environment variable and the config file in either direction. (:issue:3316)

v21.12.0 (2026-09-24)


Features - 21.12.0

... (truncated)

Commits
  • 14859e6 release 21.13.0
  • c83f49e 👷 ci(deps): review dependency licenses and advisories on pull requests (#3329)
  • 9cbed16 👷 ci(upgrade): bump the GraalPy test version weekly (#3332)
  • 7e36e66 📝 docs(release): refresh release verification docs (#3330)
  • 07dcf29 🔧 build(meta): add Changelog and Funding project URLs (#3334)
  • dbf474d 🔧 build(docs): pin Mermaid and bump it weekly (#3333)
  • a70c1da 🐛 fix(activation): stop bash re-expanding the prompt in PS1 (#3326)
  • ffb86b7 👷 ci(check): gate required checks behind one job (#3328)
  • 1ef46f1 👷 ci(codeql): scan the tasks scripts (#3327)
  • 876c5ba 🐛 fix(activation): escape PowerShell curly single quotes (#3325)
  • Additional commits viewable in compare view

Updates jupyterlab from 4.6.3 to 4.6.4

Release notes

Sourced from jupyterlab's releases.

v4.6.4

4.6.4

(Full Changelog)

Security fixes

Bugs fixed

Maintenance and upkeep improvements

Documentation improvements

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​Darshan808 (activity) | @​fly1d (activity) | @​jasongrout (activity) | @​jtpio (activity) | @​JussiRoos (activity) | @​krassowski (activity) | @​MUFFANUJ (activity) | @​tomatotomata (activity) | @​zihjiang (activity)

... (truncated)

Commits

Updates isort from 8.0.1 to 9.0.1

Release notes

Sourced from isort's releases.

9.0.1

🪲 Fixes

Other changes

Full Changelog: PyCQA/isort@9.0.0...9.0.1

9.0.0

isort 9.0.0 is the result of several alpha and beta releases, as well as a small number of fixes added after the last beta. For release notes for the individual alphas and betas we would like to refer to:

Skipped version numbers are the result of changes to our release infrastructure that broke while creating the actual releases.

Please find below the full release notes for version 9.0.0, the newest release of isort after version 8.0.1.


isort 9.0.0 contains some significant changes and improvements. Most notably there is now support for Python 3.15 and its lazy imports and we have included several performance improvements as well as providing mypyc compiled wheels for all major platforms and supported versions of Python. In our own tests we saw speeds ups of more than 2x and 3x times, but this is highly dependent on the codebase isort needs to inspect.

The full list of changes is as follows:

💥 Breaking Changes

🚀 Features

🪲 Fixes

... (truncated)

Changelog

Sourced from isort's changelog.

Changelog

NOTE: isort follows the semver versioning standard. Find out more about isort's release policy here.

Please find a complete overview of all releases on Github.

Releases

Unreleased

9.0.0 August 26 2026

... (truncated)

Commits
  • 131f4ad Fix review typing and import order in CLI invocation test
  • 9491900 Test python -m isort invocation directly
  • f0a2dca Fix python -m isort by excluding main from mypyc
  • 037c2b2 Add changelog entries for last releases
  • 727d119 Name the predicate and drive the prefix test off STRING_PREFIXES
  • dec76bc Fix multiline docstring style
  • cb179db Keep add_imports below a prefixed module docstring
  • 7542f76 test: distinguish pylint disable-next comments
  • 9f56767 Fix pylint disable-next comments at top of imports
  • 0cba6f6 Delete .cruft.json
  • Additional commits viewable in compare view

Updates matplotlib from 3.11.1 to 3.11.2

Release notes

Sourced from matplotlib's releases.

REL: v3.11.2

This is the second bugfix release of the 3.11.x series.

This release contains several bug-fixes and adjustments:

  • Speed up RGBA-stage image resampling
  • Fix hexbin clipping in PDF output
  • Fix \text with internal braces
  • Fix some crashes and make some checks more robust to unlikely cases
  • Fix frame skew when saving GIF animations with PillowWriter
  • Fix HiDPI handling in Qt toolbar and WebAgg embeddings
  • Fix ResizeEvent handling for TextBox
  • Fix bug with PGF hatch linewidth and color
  • Fix a bug with drawing an empty Collection
  • Fix incorrect glyphs in Cairo backends
  • Improve build system to prevent conflicts between wheels and system libraries
Commits
  • d3ca917 REL: v3.11.2
  • b76fea9 DOC: Set current version to 3.11.2
  • 39c7f06 DOC: Prepare GitHub stats for 3.11.2
  • 5dd13e3 Merge branch 'v3.11.1-doc' into release-3.11.2
  • aa484be Merge branch 'v3.11.0-doc' into v3.11.1-doc
  • 0e10f83 Merge pull request #32330 from meeseeksmachine/auto-backport-of-pr-32324-on-v...
  • ebe947b Backport PR #32324: Don't force any diagnostics to be errors in bundled Harfbuzz
  • 8f4b7c5 Merge pull request #32322 from meeseeksmachine/auto-backport-of-pr-32321-on-v...
  • 93278ad Backport PR #32321: DOC: correct note about PyOS_InputHook
  • b0aee78 Merge pull request #32319 from meeseeksmachine/auto-backport-of-pr-32305-on-v...
  • Additional commits viewable in compare view

Updates plotly from 7.0.0 to 7.1.0

Release notes

Sourced from plotly's releases.

v7.1.0

Added

  • Support marginal_x/marginal_y="heatmap" in density_heatmap, drawing a single-row/column heatmap strip in the margin colored by the same z/histfunc aggregate as the main plot and sharing its color scale [#5706], with thanks to @​lucasjamar for the contribution!
  • Add support for custom tick values in mpl_to_plotly when the matplotlib tick positions don't follow an arithmetic progression, including custom tick labels and tick values on date axes [#5262], with thanks to @​robertoffmoura for the contribution!

Fixed

  • Fix Plotly Express treating unsigned integer columns (uint8, uint16, uint32, uint64) in pandas DataFrames as categorical, which caused px.bar and other functions to pick the wrong orientation and render unexpected plots [#4291, #4344], with thanks to @​Belagum for the contribution!
  • Fix mpl_to_plotly not setting paper_bgcolor and plot_bgcolor from the matplotlib figure and axes backgrounds, so converted figures match the source figure's background colors [#5285], with thanks to @​robertoffmoura for the contribution!
  • Fix rendering issue causing a too-large div when calling Figure.show() in Google Colab [#5718]
  • Fix the sphinx-gallery scraper so that it generates thumbnails for figures shown with fig.show() or displayed as the last expression of a code block [#5701], with thanks to @​larsoner for the contribution!
    • The scaper now warns once (instead of failing the build) when static image export is unavailable
  • The sphinx-gallery scraper no longer scrapes files belonging to other examples during parallel builds [#5701], with thanks to @​larsoner for the contribution!

Updated

  • Update plotly.js from version 4.0.0 to version 4.1.1 [#5722, #5730]. See the plotly.js release notes for v4.1.0 and v4.1.1 for details. Notable changes include:
    • Add an opt-in modebar button for downloading Plotly figures as JSON [#7990, #8022]
    • Add legend.groupdoubleclick to set the group behavior for a legend double-click [#7997]
    • Increase default double-click delay threshold to 500ms (from 300) [#8014]
    • Fix issue with per-point marker color for hover labels in scattergl, quiver traces [#8027]
    • Update maplibre-gl to v6 to address CVE-2026-85061 [#8035]
      • Note: Safari 15, Chrome 56, Firefox 51 and later are now required for map traces
  • Update hex_to_rgb function to raise error for invalid-length hex codes, and emit warning for hex codes containing alpha [#5729], with thanks to @​dylanpulver for the contribution!
Changelog

Sourced from plotly's changelog.

[7.1.0] - 2026-09-15

Added

  • Support marginal_x/marginal_y="heatmap" in density_heatmap, drawing a single-row/column heatmap strip in the margin colored by the same z/histfunc aggregate as the main plot and sharing its color scale [#5706], with thanks to @​lucasjamar for the contribution!
  • Add support for custom tick values in mpl_to_plotly when the matplotlib tick positions don't follow an arithmetic progression, including custom tick labels and tick values on date axes [#5262], with thanks to @​robertoffmoura for the contribution!

Fixed

  • Fix Plotly Express treating unsigned integer columns (uint8, uint16, uint32, uint64) in pandas DataFrames as categorical, which caused px.bar and other functions to pick the wrong orientation and render unexpected plots [#4291, #4344], with thanks to @​Belagum for the contribution!
  • Fix mpl_to_plotly not setting paper_bgcolor and plot_bgcolor from the matplotlib figure and axes backgrounds, so converted figures match the source figure's background colors [#5285], with thanks to @​robertoffmoura for the contribution!
  • Fix rendering issue causing a too-large div when calling Figure.show() in Google Colab [#5718]
  • Fix the sphinx-gallery scraper so that it generates thumbnails for figures shown with fig.show() or displayed as the last expression of a code block [#5701], with thanks to @​larsoner for the contribution!
    • The scaper now warns once (instead of failing the build) when static image export is unavailable
  • The sphinx-gallery scraper no longer scrapes files belonging to other examples during parallel builds [#5701], with thanks to @​larsoner for the contribution!

Updated

  • Update plotly.js from version 4.0.0 to version 4.1.1 [#5722, #5730]. See the plotly.js release notes for v4.1.0 and v4.1.1 for details. Notable changes include:
    • Add an opt-in modebar button for downloading Plotly figures as JSON [#7990, #8022]
    • Add legend.groupdoubleclick to set the group behavior for a legend double-click [#7997]
    • Increase default double-click delay threshold to 500ms (from 300) [#8014]
    • Fix issue with per-point marker color for hover labels in scattergl, quiver traces [#8027]
    • Update maplibre-gl to v6 to address CVE-2026-85061 [#8035]
      • Note: Safari 15, Chrome 56, Firefox 51 and later are now required for map traces
  • Update hex_to_rgb function to raise error for invalid-length hex codes, and emit warning for hex codes containing alpha [#5729], with thanks to @​dylanpulver for the contribution!
Commits
  • 243bfd0 version changes for v7.1.0
  • 9b3c4da Merge pull request #5729 from dylanpulver/hex-to-rgb-rejects-invalid-length
  • 3aa898c Merge branch 'main' into hex-to-rgb-rejects-invalid-length
  • a93dcc0 update changelog
  • 7c85d48 add test for hex_to_rgb 4- and 8-character hex codes
  • 80a94ec accept 4- and 8- character hex codes with a warning
  • ac78b8b Merge pull request #5726 from Belagum/px-unsigned-int-continuous
  • 1cf7756 Merge branch 'main' into px-unsigned-int-continuous
  • ec79917 add attribution
  • ac7bc28 edit changelog entry
  • Additional commits viewable in compare view

Updates pymssql from 2.4.1 to 2.4.2

Release notes

Sourced from pymssql's releases.

pymssql 2.0 greenish

Experimental support for greening for gevent, etc.

Changelog

Sourced from pymssql's changelog.

Version 2.4.2 - 2026-09-26 - Mikhail Terekhov

General

  • Fix deadlock in err_handler (#1002), thanks to sergiopmscope.
Commits

Updates psycopg[binary,c,pool] from 3.3.5 to 3.3.6

Changelog

Sourced from psycopg[binary,c,pool]'s changelog.

.. currentmodule:: psycopg

.. index:: single: Release notes single: News

psycopg release notes

Current release

Psycopg 3.3.6 ^^^^^^^^^^^^^

  • Add support for Python 3.15 (:ticket:[#1245](https://github.com/psycopg/psycopg/issues/1245)).
  • Don't wait forever for a query to terminate after interrupting it, for instance if the server is unresponsive. The fix requires libpq 17 or newer (:ticket:[#1371](https://github.com/psycopg/psycopg/issues/1371)).
  • Cancel a running query upon receiving !SystemExit (:ticket:[#1384](https://github.com/psycopg/psycopg/issues/1384)).
  • Report !None instead of 65535 as the Column.precision of an :sql:interval column declared with a fields restriction and no explicit precision, such as e.g. :sql:interval day to second (:ticket:[#1397](https://github.com/psycopg/psycopg/issues/1397)).
  • Fix dumping of nested subclasses of lists as arrays (:ticket:[#1398](https://github.com/psycopg/psycopg/issues/1398)).
  • Discard prepared statements upon :sql:DEALLOCATE ALL (:ticket:[#1408](https://github.com/psycopg/psycopg/issues/1408)).
  • Better guards dumping large Python !int to binary numeric (:ticket:[#1414](https://github.com/psycopg/psycopg/issues/1414)).
  • Improve performance of async queries by reducing the overhead of the !wait_async() function (:ticket:[#1331](https://github.com/psycopg/psycopg/issues/1331)).

Psycopg 3.3.5 ^^^^^^^^^^^^^

  • Discard prepared statements upon :sql:ALTER * or DISCARD * (:ticket:[#1307](https://github.com/psycopg/psycopg/issues/1307)).
  • Fix !ProgrammingError when dumping non-!None values with no !NoneType dumper registered in python implementation (:ticket:[#1325](https://github.com/psycopg/psycopg/issues/1325)).
  • Fix !wait_selector wait function to not raise !KeyError (:ticket:[#1327](https://github.com/psycopg/psycopg/issues/1327)).
  • Fix !DataError messages leaking the literal {...} placeholder instead of the offending value when loading a pre-year-1 :sql:timestamp or a malformed binary :sql:jsonb value (:ticket:[#1372](https://github.com/psycopg/psycopg/issues/1372)).
  • Raise !DataError instead of !ValueError when ~psycopg.rows.namedtuple_row receives duplicate column names (:ticket:[#1348](https://github.com/psycopg/psycopg/issues/1348)).
  • Raise !DataError on inconsistent copy data (:tickets:[#1359](https://github.com/psycopg/psycopg/issues/1359), [#1360](https://github.com/psycopg/psycopg/issues/1360)).
  • Handle client encodings aliases (:ticket:[#1363](https://github.com/psycopg/psycopg/issues/1363)).
  • Fix building C extension with Cython 3.3.

Psycopg 3.3.4

... (truncated)

Commits
  • a67654d chore: bump psycopg package version to 3.3.6
  • 443814b Merge pull request #1416 from dvarrazzo/wait-async-perf
  • 42966e9 test: add helpful comments to some tests
  • 5e8797f test: add reasonable connect_timeout to most tests
  • c81ba62 perf: reduce the overhead of wait_async()
  • d2bbfe4 refactor: use get_running_loop() in the async wait functions
  • 2b1484a test: add a script to measure the async wait functions
  • 573cf4a test: fix incorrect wait timing test
  • 2b68990 refactor: drop leftovers of waiting with inf interval in wait_conn_async
  • 60765dd Merge pull request #1414 from dvarrazzo/fix-decimal-overflow
  • Additional commits viewable in compare view

Updates neo4j from 6.3.0 to 6.3.1

Release notes

Sourced from neo4j's releases.

Neo4j Python Driver 6.3.1

https://github.com/neo4j/neo4j-python-driver/wiki/6.x-changelog#631

Commits

Updates click from 8.4.2 to 8.5.0

Release notes

Sourced from click's releases.

8.5.0

This is the Click 8.5.0 feature release. A feature release may include new features, remove previously deprecated code, add new deprecation, or introduce potentially breaking changes.

We encourage everyone to upgrade. You can read more about our Version Support Policy on our website.

PyPI: https://pypi.org/project/click/8.5.0/ Changes:

…ates

Bumps the uv-deps group with 10 updates in the /apps/cogstack-jupyter-hub directory:

| Package | From | To |
| --- | --- | --- |
| [virtualenv](https://github.com/pypa/virtualenv) | `21.7.8` | `21.13.0` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.6.3` | `4.6.4` |
| [isort](https://github.com/PyCQA/isort) | `8.0.1` | `9.0.1` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.11.1` | `3.11.2` |
| [plotly](https://github.com/plotly/plotly.py) | `7.0.0` | `7.1.0` |
| [pymssql](https://github.com/pymssql/pymssql) | `2.4.1` | `2.4.2` |
| [psycopg[binary,c,pool]](https://github.com/psycopg/psycopg) | `3.3.5` | `3.3.6` |
| [neo4j](https://github.com/neo4j/neo4j-python-driver) | `6.3.0` | `6.3.1` |
| [click](https://github.com/pallets/click) | `8.4.2` | `8.5.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.16.8` | `0.16.9` |



Updates `virtualenv` from 21.7.8 to 21.13.0
- [Release notes](https://github.com/pypa/virtualenv/releases)
- [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst)
- [Commits](pypa/virtualenv@21.7.8...21.13.0)

Updates `jupyterlab` from 4.6.3 to 4.6.4
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.6.3...@jupyterlab/lsp@4.6.4)

Updates `isort` from 8.0.1 to 9.0.1
- [Release notes](https://github.com/PyCQA/isort/releases)
- [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md)
- [Commits](PyCQA/isort@8.0.1...9.0.1)

Updates `matplotlib` from 3.11.1 to 3.11.2
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.11.1...v3.11.2)

Updates `plotly` from 7.0.0 to 7.1.0
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v7.0.0...v7.1.0)

Updates `pymssql` from 2.4.1 to 2.4.2
- [Release notes](https://github.com/pymssql/pymssql/releases)
- [Changelog](https://github.com/pymssql/pymssql/blob/master/ChangeLog.rst)
- [Commits](pymssql/pymssql@v2.4.1...v2.4.2)

Updates `psycopg[binary,c,pool]` from 3.3.5 to 3.3.6
- [Changelog](https://github.com/psycopg/psycopg/blob/master/docs/news.rst)
- [Commits](psycopg/psycopg@3.3.5...3.3.6)

Updates `neo4j` from 6.3.0 to 6.3.1
- [Release notes](https://github.com/neo4j/neo4j-python-driver/releases)
- [Changelog](https://github.com/neo4j/neo4j-python-driver/blob/6.x/CHANGELOG.md)
- [Commits](neo4j/neo4j-python-driver@6.3.0...6.3.1)

Updates `click` from 8.4.2 to 8.5.0
- [Release notes](https://github.com/pallets/click/releases)
- [Changelog](https://github.com/pallets/click/blob/main/CHANGES.md)
- [Commits](pallets/click@8.4.2...8.5.0)

Updates `ruff` from 0.16.8 to 0.16.9
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.8...0.16.9)

---
updated-dependencies:
- dependency-name: virtualenv
  dependency-version: 21.13.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv-deps
- dependency-name: jupyterlab
  dependency-version: 4.6.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv-deps
- dependency-name: isort
  dependency-version: 9.0.1
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: uv-deps
- dependency-name: matplotlib
  dependency-version: 3.11.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv-deps
- dependency-name: plotly
  dependency-version: 7.1.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv-deps
- dependency-name: pymssql
  dependency-version: 2.4.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv-deps
- dependency-name: psycopg[binary,c,pool]
  dependency-version: 3.3.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv-deps
- dependency-name: neo4j
  dependency-version: 6.3.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv-deps
- dependency-name: click
  dependency-version: 8.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv-deps
- dependency-name: ruff
  dependency-version: 0.16.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv-deps
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Sep 30, 2026
@alhendrickson
alhendrickson merged commit f4b30fa into main Sep 30, 2026
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@alhendrickson
alhendrickson deleted the dependabot/uv/apps/cogstack-jupyter-hub/uv-deps-72f4b184ca branch September 30, 2026 11:51
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