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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 42 11

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 27 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 705 repositories
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging's past year of commit activity
    C# 0 MIT 0 20 2 Updated Oct 2, 2026
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper's past year of commit activity
    Python 0 MIT 2 37 3 Updated Oct 2, 2026
  • aind-dft-ephys-analysis Public

    shared library for dynamic foraging task (DFT) - neuropixels analysis

    AllenNeuralDynamics/aind-dft-ephys-analysis's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 2, 2026
  • dynamic-foraging-processing Public

    A library for processing dynamic foraging behavior data acquired on the new acquisition standard

    AllenNeuralDynamics/dynamic-foraging-processing's past year of commit activity
    Python 0 MIT 0 8 5 Updated Oct 2, 2026
  • AllenNeuralDynamics/LCNE_10x_preprocessing_R's past year of commit activity
    R 0 MIT 0 1 1 Updated Oct 2, 2026
  • aind-smartspim-pipeline Public

    Repository that hosts the 3D-Maestro pipeline code

    AllenNeuralDynamics/aind-smartspim-pipeline's past year of commit activity
    Nextflow 7 MIT 3 3 0 Updated Oct 2, 2026
  • aind-smartspim-pipeline-dispatcher Public

    Dispatcher capsule for the SmartSPIM pipeline in Code Ocean.

    AllenNeuralDynamics/aind-smartspim-pipeline-dispatcher's past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 2, 2026
  • aind-qc-portal Public

    Quality control portal

    AllenNeuralDynamics/aind-qc-portal's past year of commit activity
    Python 2 MIT 1 3 1 Updated Oct 2, 2026
  • AllenNeuralDynamics/aind-dynamic-foraging-behavior-video-analysis's past year of commit activity
    Python 1 MIT 0 1 0 Updated Oct 2, 2026
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging's past year of commit activity
    C# 3 MIT 0 7 2 Updated Oct 2, 2026