Issues

• Contact prediction task specifies 40 CASP12 test proteins, but the current config downloads 34 CASP14 proteins

  DeepGraphLearning/PEER_Benchmark#11 · Filter by author adpartin opened on Sep 7, 2026

• Running codes in Colab

  DeepGraphLearning/PEER_Benchmark#10 · Filter by author beyzoskaya opened on Sep 13, 2025

• Unfair comparison between ProtBert and ESM

  DeepGraphLearning/PEER_Benchmark#9 · Filter by author ww-rm opened on Feb 29, 2024

• get datasets?

  DeepGraphLearning/PEER_Benchmark#8 · Filter by author tyang816 opened on Sep 15, 2023
  1

• EnzymeCommissions always NaN using ESM fixed

  DeepGraphLearning/PEER_Benchmark#7 · Filter by author jasperhyp opened on Dec 2, 2022
  8