Issues

• Support for WSI pyramids?

  CellProfiler/python-bioformats#174 · Filter by author Aiosa opened on May 5, 2025

• error: java.lang.ClassNotFoundException: loci.formats.in.URLReader

  CellProfiler/python-bioformats#173 · Filter by author chengdonglin opened on Mar 6, 2025

• python-bioformats support qptiff file?

  CellProfiler/python-bioformats#172 · Filter by author chengdonglin opened on Mar 6, 2025
  1

• How do I turn off debug output? When I read the image, it produces a lot of output

  CellProfiler/python-bioformats#171 · Filter by author CDPDisk opened on Nov 28, 2024
  2

• ModuleNotFoundError: No module named 'numpy' when installing python-bioformats

  CellProfiler/python-bioformats#169 · Filter by author d4nvjpl0ng4n opened on Aug 14, 2024
  1

• Bug in opening Olympus *.vsi metadata for multi-dimensional (multiZ) files.

  CellProfiler/python-bioformats#168 · Filter by author LyesSp opened on Mar 12, 2024

• Can't get well plate information from OMEXML

  CellProfiler/python-bioformats#167 · Filter by author JKelle opened on Feb 19, 2024

• Upgrade bioformats_package.jar

  CellProfiler/python-bioformats#165 · Filter by author Sravani-K opened on Dec 28, 2023

• Array too large Exception when using reader.read()

  CellProfiler/python-bioformats#164 · Filter by author nishantshakya opened on Sep 26, 2023

• extract metadata from VSI files

  CellProfiler/python-bioformats#163 · Filter by author LibbyLi667 opened on Jun 29, 2023

• OMEXML of CZI contains only one channel in DisplaySetting

  CellProfiler/python-bioformats#162 · Filter by author KiraUnderwood opened on Feb 3, 2023

• How to get the tile images in multiprocessing

  CellProfiler/python-bioformats#161 · Filter by author InfinityBox opened on Dec 7, 2022

• Make dependencies on boto3 optional

  CellProfiler/python-bioformats#160 · Filter by author jhnnsrs opened on Sep 27, 2022

• Unable to load CH5 File

  CellProfiler/python-bioformats#159 · Filter by author roshankern opened on Jun 2, 2022
  8

• Update link: OME-XML schema documentation

  CellProfiler/python-bioformats#158 · Filter by author YoussefAyachii opened on Feb 28, 2022

• Long and possibly multiple exceptions while using the package

  CellProfiler/python-bioformats#156 · Filter by author vbmade2000 opened on Feb 22, 2022
  2

• Update to latest java version?

  CellProfiler/python-bioformats#155 · Filter by author kmccormickTetra opened on Jan 25, 2022
  2

• How to extract metadata?

  CellProfiler/python-bioformats#151 · Filter by author vbmade2000 opened on Oct 23, 2021
  1

• bioformats.__version__ should print package version (reloaded)

  CellProfiler/python-bioformats#147 · Filter by author ehrenfeu opened on Jul 2, 2021

• Instantiate file reader with stream instead of path

  CellProfiler/python-bioformats#146 · Filter by author evan-anderson-ts opened on May 28, 2021

• Failing to extract OIR metadata

  CellProfiler/python-bioformats#145 · Filter by author bethac07 opened on Apr 9, 2021

• How to install in readme

  CellProfiler/python-bioformats#144 · Filter by author wimpomp opened on Mar 15, 2021

• Bioformats not finding Python Javabridge?

  CellProfiler/python-bioformats#143 · Filter by author u2056710 opened on Jan 22, 2021

• Conda fails to install python-bioformats- incompatible with python 3?

  CellProfiler/python-bioformats#142 · Filter by author markemus opened on Jan 6, 2021
  5

• Need to pass CFLAG to get pip/developer (python setup.py) installation to work

  CellProfiler/python-bioformats#141 · Filter by author zacsimile opened on Dec 4, 2020